EGAF00005183711 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005183711
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17035901
Sequences flagged as poor quality	0
Sequence length	150
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	29465	0.0	8.768018	1
TCGGAAG	32300	0.0	7.911371	3
GAGCGTC	32915	0.0	7.851166	9
AGAGCGT	33035	0.0	7.7790666	8
CACTATA	6700	0.0	7.4132366	9
AAGAGCG	35195	0.0	7.4038887	7
ACACTAT	6625	0.0	7.388505	8
ATCGGAA	36075	0.0	7.310801	2
TAGATCT	8635	0.0	6.5191197	40-44
AACACTA	7585	0.0	6.358454	7
AAACACT	9080	0.0	6.262357	6
GGAAGAG	44790	0.0	6.219085	5
CGGAAGA	43025	0.0	6.0731173	4
GAAGAGC	45750	0.0	5.9312587	6
CAAACAC	10340	0.0	5.1511927	5
AGTGTGA	11355	0.0	5.0222473	25-29