FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005183714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005183714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15781977
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAGTGGT121000.046.1127324
AGTGGTA133300.041.963925
AGCAGTG149250.037.6475452
GCAGTGG166700.033.4279563
GTGGTAT173950.032.0335046
TGGTATC192850.029.2312897
AAGCAGT203350.028.3433421
GGTATCA218400.025.8445688
GTATCAA225750.025.6406279
GCAGAGT128400.09.4311815-19
TCTTGGG135000.08.59635435-39
CGCAGAG145150.08.42220215-19
AACGCAG157700.07.90700210-14
CAACGCA162800.07.845034610-14
ACGCAGA175850.07.30394515-19
TCAACGC184050.06.986204610-14
GAGCACA119400.06.09000169
CTTGGGG101200.06.004059335-39
TATCAAC224750.05.97733510-14
AGAGCAC124400.05.9610498
Produced by FastQC (version 0.11.5)