FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005183736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005183736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18566079
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAGTGGT113050.039.6755684
AGTGGTA117350.037.851715
AGCAGTG155700.029.148262
GTGGTAT162450.027.9638276
GCAGTGG165250.027.5783273
TGGTATC199750.023.0313057
GTATCAA202900.022.7090459
GGTATCA209950.021.8780848
AAGCAGT220600.021.413481
TCTTGGG133900.07.24754835-39
GCAGAGT158250.06.44208715-19
CAACGCA164600.06.37710810-14
AACGCAG184000.05.64996110-14
AGAGCAC169400.05.39752678
TATCAAC230850.05.089631610-14
GAGCACA172000.05.0647499
CTTGGGG107100.05.05487235-39
GATCGGA186150.05.04423571
Produced by FastQC (version 0.11.5)