FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005183764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005183764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19605288
Sequences flagged as poor quality0
Sequence length150
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAGTGGT93600.032.7803654
AGTGGTA103500.030.0485085
GTGGTAT139350.022.6280236
AGCAGTG142250.022.3462962
GTATCAA152200.021.0014889
TGGTATC158350.020.1403167
GGTATCA169150.018.6415338
GCAGTGG177700.017.7164673
AAGCAGT184100.017.5188431
GCAGAGT115100.05.904381315-19
TCTTGGG116600.05.742656735-39
CAACGCA146750.05.08233310-14
Produced by FastQC (version 0.11.5)