FastQCFastQC Report
Sat 11 May 2024
EGAF00005183820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005183820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19422677
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCGTAGAATCTCGTAT291570.1501183384762049TruSeq Adapter, Index 20 (97% over 37bp)
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC259110.1334059151578333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)