FastQCFastQC Report
Sat 11 May 2024
EGAF00005183892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005183892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15992504
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC922770.577001575237999No Hit
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG579110.36211340012795995No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATGAATCATCTCGTAT454190.28400180484557014TruSeq Adapter, Index 9 (97% over 38bp)
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA421220.263385896292413No Hit
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA288780.18057209802792606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)