FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005184459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005184459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13406221
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCACTCA48950.012.2059037
TAGCCAC55400.010.9151634
ACTCAAC61350.09.9728979
CACTCAA59300.09.7107398
GCCACTC74050.08.4574366
AGCCACT84650.07.6535575
TATAGCC89650.07.0670282
ATAGCCA103600.06.1148193
ATATAGC116950.05.9648721
GGCCTAA21500.05.82679275-79
CCGTTAA50900.05.7986494
CTCACTA25600.05.005306715-19
Produced by FastQC (version 0.11.5)