EGAF00005184638 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005184638
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13255097
Sequences flagged as poor quality	0
Sequence length	150
%GC	55

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTTACT	3255	0.0	11.293987	1
TTAAGTA	4625	0.0	7.9383917	8
CTTACTT	5160	0.0	7.4015293	2
CTAGTAC	1010	0.0	6.8451533	30-34
TAAGTAA	5430	0.0	6.7615213	9
GTTACTA	2815	2.3046596E-9	6.401618	1
ACTTTAA	6340	0.0	6.245217	5
GTATAGA	5600	0.0	6.178476	1
GTATAGT	5330	0.0	6.0857406	1
TACTAGT	1490	0.0	5.8000035	30-34
TACTTTA	6510	0.0	5.7535253	4
GTATATA	7050	0.0	5.7256794	1
GTATACG	5640	0.0	5.6234355	1
ACTAGTA	1490	0.0	5.4133368	30-34
GTATATG	8380	0.0	5.161018	1
GTATGGA	8260	0.0	5.14873	1
TTTAAGT	7330	0.0	5.1070895	7
GTATACA	4275	5.997208E-9	5.0584016	1
GTATCCA	7470	0.0	5.0177712	1