EGAF00005184880 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005184880
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17537222
Sequences flagged as poor quality	0
Sequence length	150
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCACTCA	6495	0.0	16.294142	9
GCCACTC	8055	0.0	13.852747	8
AGCCACT	12125	0.0	9.321541	7
AAGCCAC	12550	0.0	9.005871	6
CCGTTAA	7065	0.0	8.459307	4
CGTTAAA	7925	0.0	8.084638	5
GGCCTAA	2980	0.0	7.6826463	75-79
TACAAAG	18715	0.0	6.6946754	2
TCCGTTA	9955	0.0	6.509837	3
ACAAAGC	18635	0.0	6.4142747	3
GTTAAAT	11100	0.0	5.966706	6
ATACAAA	23770	0.0	5.8047667	1
CTCACTA	4460	0.0	5.584904	15-19
AAAGCCA	23220	0.0	5.2705564	5
GGGCCCC	5080	0.0	5.215893	110-114
CCAGCTA	5535	0.0	5.2036877	4
CTAGCCC	1520	0.0	5.020479	50-54