EGAF00005185085 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005185085
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11770998
Sequences flagged as poor quality	0
Sequence length	150
%GC	52

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	13215	0.0	9.07344	1
TCGGAAG	14930	0.0	8.104653	3
AGAGCGT	16180	0.0	7.697498	8
ATCGGAA	17140	0.0	7.185689	2
AAGAGCG	19110	0.0	6.7810006	7
CACACTA	1945	1.6573358E-6	6.6624637	7
GTATAGA	6010	0.0	6.569231	1
GAGCGTC	20680	0.0	6.1269464	9
GTGTGTA	4160	0.0	5.779925	35-39
TGTGTAG	4475	0.0	5.469592	40-44
TAGATCT	4790	0.0	5.410483	40-44
TACAGTG	4715	0.0	5.374428	30-34
GGAAGAG	24200	0.0	5.265593	5
ACACACT	2625	3.6597092E-5	5.210822	6
AGTGTAC	4880	0.0	5.104311	25-29
GAAGAGC	25150	0.0	5.095232	6
CGGAAGA	24650	0.0	5.0841374	4