FastQCFastQC Report
Sat 11 May 2024
EGAF00005185233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005185233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15112801
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTGT3283882.1729128835878937No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG1340280.8868508226899832Illumina Single End PCR Primer 1 (100% over 50bp)
CGCGCATGGTGGATTCACAATCCACTGCCTTGATCCACTTGGCTACATCC275190.1820906660519119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)