FastQCFastQC Report
Sat 11 May 2024
EGAF00005185452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005185452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15756161
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATCTGAATCTCGTAT1871201.187598933521941TruSeq Adapter, Index 7 (97% over 35bp)
GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTGT1856071.1779963406060652No Hit
CGCGCATGGTGGATTCACAATCCACTGCCTTGATCCACTTGGCTACATCC164290.10427032320880703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)