EGAF00005185607 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005185607
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14240075
Sequences flagged as poor quality	0
Sequence length	150
%GC	54

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCCCAA	8135	0.0	11.770883	9
TTAGGTA	2270	0.0	9.069917	20-24
GGTTCGG	13130	0.0	8.253191	1
CGAACCC	9660	0.0	8.048431	5
GTTCGGA	12950	0.0	7.958978	2
CCGAACC	12425	0.0	6.6629424	4
TCGGAAG	14955	0.0	6.4503455	4
TCCGAAC	12295	0.0	6.4479494	3
AACCCGC	11620	0.0	6.443055	7
AAGCCCA	16850	0.0	6.237601	8
CTTCCGA	13350	0.0	6.101506	1
GAACCCG	13460	0.0	6.0436325	6
CGTTTAG	2395	0.0	6.011523	50-54
TTTAGGT	3705	0.0	5.945609	20-24
GTTTAGA	2650	0.0	5.8133698	50-54
TAAGGGG	3700	0.0	5.7979765	25-29
TAGGTAA	3740	0.0	5.7359815	20-24
TTCGGAA	20380	0.0	5.269138	3
CTCTAAC	1830	0.007418889	5.166455	1