FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005185660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005185660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16689092
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGCGA16750.011.075729115-119
GCTAGCG24350.07.8550706115-119
GGCTAGC26900.07.2708306115-119
AGGGCCG158600.06.51736931
TGGCTAG29800.06.5150084115-119
TTTCCCC162450.06.4216159
ATTTCCC188250.05.88547858
GGGCCGA175250.05.79367832
GCCGATT180950.05.60387754
CCGATTT216150.05.1904695
Produced by FastQC (version 0.11.5)