EGAF00005185875 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005185875
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18261415
Sequences flagged as poor quality	0
Sequence length	150
%GC	45

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCCTTA	4655	0.0	16.85566	4
CCCTTAG	5740	0.0	13.920499	5
TAGAGCC	6060	0.0	13.423219	9
CACACAA	7140	0.0	10.18268	4
GTGCACA	7650	0.0	9.800886	1
CCTTAGA	8910	0.0	9.533456	6
GCACACA	7665	0.0	9.495011	3
CTTAGAG	8800	0.0	9.161813	7
TGCCCCT	9530	0.0	8.847022	2
TTAGAGC	8845	0.0	8.789658	8
TGCACAC	9055	0.0	8.674455	2
GCCCCTT	10505	0.0	7.9569793	3
CCCCCCA	3525	0.0	5.840527	10-14
GTCCCTA	3810	1.1386874E-9	5.5949945	1
CTGCCCC	17710	0.0	5.437251	1
CACAAAC	15230	0.0	5.4355564	6
CAGCTAG	3375	0.0	5.4180813	125-129
ACACAAA	15835	0.0	5.409693	5