FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005186036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005186036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14088895
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAGTCGT105050.035.7833252
AGTCGTA76950.023.3925483
CCAGTCG165800.023.1857381
AGTCGTG67000.018.6990953
GTCGTAT108100.010.5237694
AGTCGTC93700.09.067523
GTCGTCT87000.05.71044254
GTCGTGT127700.05.6946944
GTTAGGG16800.00292605955.59149361
Produced by FastQC (version 0.11.5)