EGAF00005186132 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005186132
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12769230
Sequences flagged as poor quality	0
Sequence length	150
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	13060	0.0	13.415842	1
TCGGAAG	16520	0.0	10.937481	3
AGAGCGT	18880	0.0	9.647837	8
GAGCGTC	18895	0.0	9.565058	9
ATCGGAA	19710	0.0	9.459469	2
AAGAGCG	22770	0.0	8.347421	7
TAGATCT	5080	0.0	7.623872	40-44
CGGAAGA	25380	0.0	7.5741	4
GGAAGAG	28520	0.0	6.8159385	5
GAAGAGC	29015	0.0	6.5755897	6
GTGTGTA	5965	0.0	6.5409994	35-39
AGTGTAC	6490	0.0	6.2340226	25-29
TACAGTG	6765	0.0	5.852664	30-34
TGTGTAG	6710	0.0	5.8362436	40-44
GTAGATC	7200	0.0	5.7190056	40-44
ACAGTGG	7480	0.0	5.620435	30-34
GTACAGT	7670	0.0	5.2747226	30-34
GAGTGTA	8005	0.0	5.1261377	25-29
GTAGGGA	8150	0.0	5.106226	15-19