FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005186249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005186249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16840748
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACACTA64050.012.2512237
CACTATA70750.011.3963289
ACACTAT70650.011.20863158
AAACACT108550.08.0246776
ACCAAAC107000.07.5408183
CCAAACA121850.07.26691964
CAAACAC120500.07.228875
TACCAAA160900.05.59809352
ATACCAA183500.05.14136841
GGGGGGG55703.6379788E-125.04539972
Produced by FastQC (version 0.11.5)