FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005186615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005186615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13414149
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGAGTAG22150.011.0508283
AGTGAGT28050.010.1958981
GTGAGTA34100.09.0784192
GAGTAGG38601.2732926E-115.96816734
TAGGAGG47153.6379788E-125.4966637
AGTAGGA53003.6379788E-125.16161975
CTAGGAG9101.1059456E-95.06304850-54
CCACTCA37251.9577783E-75.02489479
Produced by FastQC (version 0.11.5)