FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005186618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005186618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15461442
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTGGGA106300.011.4089071
CTTGCGA73150.010.8863271
CTTGGGT58200.09.916841
CTAGGGG5900.0031974859.9062021
CTTGGGC96150.09.6499191
CTAGGGA10801.1065076E-69.4705121
CTAGGTC7752.980914E-49.4268691
CTTGGTA109400.09.1489751
CTTGGCA151500.08.9695261
CTTCCGA167250.08.7800931
CTTGGCG147700.08.7551161
CTTGGTG108750.08.7333981
CTTGCTA61100.08.7287261
GTTGGGA116350.08.6652671
GTTGCGA70650.08.5829221
CTTGGGG74450.08.3411021
CTTGAGA71550.08.2707431
CTTGTCA144500.08.1400531
CTTCCCA126650.08.0182361
CTTGGCC106650.08.0148281
Produced by FastQC (version 0.11.5)