FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005186638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005186638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16190145
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTTAG28850.08.2345965
CCCCTTA34400.07.32498264
CCTGTAG55300.05.59889176
TTAGAGC47650.05.5913468
CCTTAGA48301.8189894E-125.5158616
CTTAGAG51351.8189894E-125.3285287
Produced by FastQC (version 0.11.5)