EGAF00005186847 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005186847
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18158287
Sequences flagged as poor quality	0
Sequence length	150
%GC	52

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACACTA	2545	0.0	15.273575	8
ACACTAC	4830	0.0	8.196912	9
GGGGGGG	5570	0.0	7.6260505	2
ACGTTAA	3405	0.0	6.9763827	4
TACGTTA	3665	0.0	6.875421	3
AACACTA	5530	0.0	6.37831	7
CCACACT	6815	0.0	6.337531	7
ACACTAT	5345	0.0	6.329725	8
AGGGGGG	3875	9.094947E-12	6.047208	1
CCTAGAC	1360	0.0	5.9284844	120-124
GTTACGT	5115	0.0	5.8696856	1
GAGCACA	15045	0.0	5.693633	9
TGGGGGG	4155	5.820766E-11	5.639694	1
CACTATA	6005	0.0	5.6340346	9
CTAGACC	1595	0.0	5.5966167	120-124
AGAGCAC	16175	0.0	5.518386	8
GATCGGA	16655	0.0	5.188167	1