EGAF00005187003 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005187003
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13248693
Sequences flagged as poor quality	0
Sequence length	150
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGAGTG	4535	0.0	13.176771	2
CGTGAGT	4550	0.0	12.468161	1
ACTAATG	3825	0.0	9.887605	1
GAGTGCA	7100	0.0	9.834139	4
TGAGTGC	6500	0.0	9.413295	3
CTAATGC	4315	0.0	8.843074	2
ACACTGT	5840	0.0	7.395395	4
ACACACT	5680	0.0	7.224948	2
CACTGTG	6340	0.0	7.0406156	2
CCACTGT	7130	0.0	6.936471	1
CAATGCA	14505	0.0	6.89808	5
ACTGTGC	7795	0.0	6.7412868	3
GTGCCTA	4470	0.0	6.442592	2
ATGCAGG	24310	0.0	6.4253635	7
AGTGCAG	10395	0.0	6.370807	5
AACACAC	6880	0.0	6.025674	1
TCAATGC	18130	0.0	5.836365	4
AATGCAG	17840	0.0	5.8103027	6
GGGGGGG	3895	7.90842E-8	5.0416822	1