FastQCFastQC Report
Sat 11 May 2024
EGAF00005187355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005187355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13090776
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC364360.27833338527830587No Hit
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG346130.26440754925452853No Hit
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA244920.18709356878461597No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCACCTCATCTCGTAT208730.15944814883395758TruSeq Adapter, Index 1 (97% over 38bp)
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA178520.13637083088122506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)