EGAF00005187515 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005187515
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16283674
Sequences flagged as poor quality	0
Sequence length	150
%GC	52

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGAGCAC	17500	0.0	9.00492	8
GATCGGA	17870	0.0	8.765091	1
GAGCACA	17335	0.0	8.7585535	9
TCGGAAG	19530	0.0	7.923104	3
ATCGGAA	22090	0.0	7.168002	2
AAGAGCA	25010	0.0	6.588637	7
GGAAGAG	25760	0.0	6.201388	5
CATTACC	10950	0.0	5.9601283	1
CATGCAT	6015	0.0	5.786725	1
CCTTCAT	21595	0.0	5.7085123	1
CATGAGT	6635	0.0	5.683157	1
AGTCACA	6045	0.0	5.6192408	25-29
CATTGAT	18350	0.0	5.5719895	1
GAAGAGC	30320	0.0	5.5060554	6
CATTGAC	17180	0.0	5.4027395	1
CGGAAGA	29580	0.0	5.351846	4
CCTTCAC	22610	0.0	5.2277436	1
CATACAT	11080	0.0	5.0393925	1