EGAF00005187673 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005187673
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15308286
Sequences flagged as poor quality	0
Sequence length	150
%GC	44

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTCTG	51160	0.0	6.039735	140-144
CACGTCT	52710	0.0	6.0287604	140-144
AGTCACG	20365	0.0	5.889512	140-144
CACACGT	40930	0.0	5.727055	140-144
GTCACGT	20795	0.0	5.608475	140-144
CGTCTGA	36950	0.0	5.5957546	140-144
ACACGTC	41145	0.0	5.511657	140-144
AGCACAC	47040	0.0	5.4361863	140-144
GCACACG	45945	0.0	5.3714466	140-144
CAGTCAC	23695	0.0	5.3291945	140-144
AGAGCAC	52480	0.0	5.328121	140-144
TCTGAAC	35490	0.0	5.310707	140-144
GAGCACA	50070	0.0	5.308512	140-144
ACTCCAG	29700	0.0	5.2309875	140-144
CTGAACT	35505	0.0	5.219246	140-144
CCAGTCA	26235	0.0	5.038257	140-144
GTCTGAA	38885	0.0	5.0358815	140-144