EGAF00005187813 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005187813
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15165660
Sequences flagged as poor quality	0
Sequence length	150
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGAAC	2320	0.0	9.933365	3
CAGTGGT	6630	0.0	8.688332	4
AGTGGTA	7035	0.0	8.494423	5
CTCTAGA	2675	0.0	7.8135977	1
TGAGAGG	6060	0.0	7.011477	2
CTGAGAG	6100	0.0	6.734756	1
TCTAGAA	3960	0.0	6.3650665	2
AGCAGTG	9260	0.0	5.9883866	2
CACACGT	17440	0.0	5.8127704	140-144
TAGATCG	9310	0.0	5.4289327	140-144
GTGGTAT	10850	0.0	5.3749585	6
GTGTGTC	6980	0.0	5.369388	1
CACGTCT	16875	0.0	5.3588657	140-144
CCTTCAT	20855	0.0	5.287594	1
CATGAGT	6895	0.0	5.2265196	1
ACACGTC	18615	0.0	5.206058	140-144
GATCGGA	30915	0.0	5.151609	140-144
GAGAGGC	7870	0.0	5.0329475	3
CCAGTAA	6605	0.0	5.014237	7