Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005188197 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17240436 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCACTTA | 7415 | 0.0 | 23.589113 | 9 |
AGCCACT | 11910 | 0.0 | 14.8678665 | 7 |
AAGCCAC | 13015 | 0.0 | 14.048012 | 6 |
GCCACTT | 13130 | 0.0 | 13.540701 | 8 |
GAGCACA | 16355 | 0.0 | 10.694789 | 9 |
ACAAAGC | 18035 | 0.0 | 10.344664 | 3 |
AGAGCAC | 18130 | 0.0 | 9.647558 | 8 |
GTTATGT | 9385 | 0.0 | 9.468192 | 1 |
GGCCTAA | 3845 | 0.0 | 9.437074 | 65-69 |
TACAAAG | 21590 | 0.0 | 9.008819 | 2 |
GATCGGA | 21085 | 0.0 | 8.635905 | 1 |
GTTAAAT | 10285 | 0.0 | 8.608473 | 6 |
TATGTTA | 11675 | 0.0 | 8.082527 | 3 |
ATACAAA | 26200 | 0.0 | 7.6171193 | 1 |
TGTTAAA | 12000 | 0.0 | 7.438164 | 5 |
AAAGCCA | 28170 | 0.0 | 7.1803365 | 5 |
TCGGAAG | 26675 | 0.0 | 7.0480485 | 3 |
CCCCTAA | 5785 | 0.0 | 6.644379 | 100-104 |
ATGTTAA | 13570 | 0.0 | 6.635336 | 4 |
AAGAGCA | 28515 | 0.0 | 6.6138325 | 7 |