FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005188293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005188293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61760637
Sequences flagged as poor quality0
Sequence length126
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCAACAATCTCGTATGC9001021.457404009612142TruSeq Adapter, Index 2 (97% over 36bp)
GTGAAAGATGAGCTGGAGGACCGCAATAGGGGTAGGTCCCCTGTGGAAAA874840.14165009340820106No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT834340.13509251855676294No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)