FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005189155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005189155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72380227
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA455450.025.971161
TCGGAAG475400.024.8782252
CGGAAGA507050.023.3673043
TATGCCG186150.015.03377445-49
AGAGCAC893900.013.731947
CTCGTAT202800.013.6494140-44
CGTATGC204750.013.41325545-49
AGCACAC951150.012.913029
TCTCGTA197400.012.85545440-44
GAGCACA978800.012.75552758
ATGCCGT219400.012.61669445-49
GAAGAGC1007050.012.3115415
GCCGTCT235600.011.58347850-54
ATCTCGT243400.010.62240240-44
TCGTATG230700.010.49101240-44
TGCCGTC228650.010.38225145-49
CGTCTTC278600.09.98812650-54
CCGTCTT286250.09.74144750-54
AAGAGCA1370050.09.4513876
GGAAGAG1601800.08.0977414
Produced by FastQC (version 0.11.5)