EGAF00005189188 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005189188
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	62532519
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	6465	0.0	9.372848	55-59
AGCGTCG	28840	0.0	8.191661	9
TCGCCGT	8020	0.0	7.862827	55-59
GAGCGTC	35705	0.0	6.636974	8
GCCGTAT	9605	0.0	6.610595	55-59
GTCGCCG	9705	0.0	6.6022286	55-59
GCGTCGG	4880	0.0	6.538505	145
CGTCGTG	26570	0.0	6.332017	145
AGAGCGT	39800	0.0	6.1541533	7
AGATCGG	45660	0.0	5.654051	145
GATCGGA	42365	0.0	5.6487503	145
TGGTCGC	12065	0.0	5.466769	50-54
GCGTCGT	26630	0.0	5.4191046	145
CGTATCA	12540	0.0	5.2829895	60-64
TCGGAAG	46535	0.0	5.249227	2
AAGAGCG	48300	0.0	5.221429	6
TCGTGTA	28740	0.0	5.0969477	145
ATCGGAA	46045	0.0	5.094085	1
GTGGTCG	13135	0.0	5.032472	50-54