FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005189194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005189194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56169241
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG400400.015.2589739
GAGCGTC468800.013.1409358
CGCCGTA116100.012.89127455-59
AGAGCGT516550.011.9541797
TCGCCGT132650.011.3483155-59
ATCGGAA578800.010.7629071
GCCGTAT141950.010.68631255-59
TCGGAAG591350.010.5650232
AAGAGCG608500.010.2785386
CGGAAGA619850.010.1021293
GTCGCCG153100.010.096951555-59
CGTATCA166400.09.35946860-64
TGGTCGC169750.09.13226450-54
GTGGTCG182700.08.619513550-54
CCGTATC163150.07.693436655-59
TCTCGGT232250.07.060690445-49
GGTCGCC181750.07.009627350-54
GAAGAGC970400.06.78802445
GCGTGTA236950.06.70095735-39
CGGTGGT259700.06.40352850-54
Produced by FastQC (version 0.11.5)