EGAF00005189329 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005189329
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29675464
Sequences flagged as poor quality	0
Sequence length	35-51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGAAGAGCACACGTCTGAACTCCAGTCACAGCAGGAAATCTCGTATGCCGT	126169	0.4251626865884894	TruSeq Adapter, Index 1 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATGCCGT	15915	60.79274	45
TATGCCG	15760	43.02253	44
ACACGTC	15985	39.745518	9
CGTCTGA	16285	38.863132	12
CGTATGC	16130	38.21596	42
CTCGTAT	16035	38.09213	40
TCTCGTA	15520	37.4175	39
ACGTCTG	17005	37.413624	11
GCACACG	17145	37.22514	7
CACGTCT	17155	37.125572	10
TCGTATG	16545	37.055008	41
ATCTCGT	15970	36.418087	38
CACACGT	17730	35.90901	8
AATCTCG	16940	34.371925	37
GTATGCC	18625	34.04999	43
AGAGCAC	22040	29.386843	4
AGCACAC	22595	28.709267	6
GAGCACA	22565	28.678862	5
GAAGAGC	23185	28.062777	2
CCAGTCA	22890	27.30938	22