FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005189608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005189608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2289057
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTCCACGAGCACCAGCAGGGCCAGGGGCTCCAGGGCGACCTCTCTCACCAGGCAGGCCACGGGGGCCCATCTG30750.13433479376005053No Hit
CATTTCCACGAGCACCAGCAGGGCCAGGGGCTCCAGGGCGACCTCTCTCA26610.11624874347820957No Hit
CTTCATTCCAGGGAGGCCAGCTGTTCCGGGCAATCCTCGAGCACCCTGAGGCCCAGGAGGCCCACGCTCACCAGG25760.11253542397589925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)