FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005189616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005189616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3029779
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTAATCCAGGAGCACCTGTTTCACCCTTTTCTCCATTTCGTCCATCGA81880.2702507344595101No Hit
GTCAAAGATAAAAACTAAGTTTGAGAGATGAATGCAAAGGAAAAAAATAT61110.2016978796143217No Hit
CTTCATTCCAGGGAGGCCAGCTGTTCCGGGCAATCCTCGAGCACCCTGAGGCCCAGGAGGCCCACGCTCACCAGG59730.19714309195489177No Hit
CTCCTTTGTCACCACCAGGCCCAGTAGGCCCTGGGGGTCCCTGAGGTCCA55630.18361075180731004No Hit
GTCCTCTCTCACCAGGAAGCCCACGGGCTCCTGTTTGACCTGGAGTTCCA47510.15681011717356283No Hit
CTCCATTCTTTCCAGGGGGACCTGGGGGACCTCGGGGACCCATGGGACCT46820.15453272334384785No Hit
CTTTTCTCCATTTCGTCCATCGAAGCCTCTGTGTCCTTTCATACCAGGGA46230.15258538659090318No Hit
CTCCATTTTCACCAGGGCTGCCAGGCTCACCCTTAGGACCAGCAGGACCA45090.1488227359157219No Hit
CCCTTTTCTCCATTTCGTCCATCGAAGCCTCTGTGTCCTTTCATACCAGG44500.14687539916277723No Hit
CTCCATTTCGTCCATCGAAGCCTCTGTGTCCTTTCATACCAGGGAATCCA41520.1370396982750227No Hit
CTCCATCTTTGCCAGCAGGACCGACAGCGCCAGGGGGTCCGGGAACACCT39040.12885428277111963No Hit
CACCCTTTAATCCAGGAGCACCTGTTTCACCCTTTTCTCCATTTCGTCCA37230.12288024968157743No Hit
GTTCGGTTGGTCAAAGATAAAAACTAAGTTTGAGAGATGAATGCAAAGGA31950.10545323602810634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)