FastQCFastQC Report
Wed 1 May 2024
EGAF00005198386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005198386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28040148
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length62-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1609500.5739983968700879No Hit
GCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG1418440.5058603827626016No Hit
GCTTCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG574150.2047599748760242No Hit
GCTCTAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG552060.1968819850736879No Hit
GCTCCGATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG434830.15507407450203187No Hit
GTTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG403400.14386514650350635No Hit
TGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG394290.14061623355197697No Hit
CGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG375040.1337510772054413No Hit
TCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAACAACAAAGC367600.13109773885644255No Hit
GCTCCCATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG346920.12372259946702135No Hit
GCTCCTATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG282590.10078049516714391No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)