EGAF00005198386 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005198386
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28040148
Sequences flagged as poor quality	0
Sequence length	62-76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	160182	0.571259466961444	No Hit
GCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG	141814	0.5057533933130453	No Hit
GCTTCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG	57401	0.20471004646623123	No Hit
GCTCTAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG	55197	0.19684988823882096	No Hit
GCTCCGATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG	43478	0.1550562429271058	No Hit
GTTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG	40339	0.1438615801885211	No Hit
TGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG	37479	0.13366191933081095	No Hit
TCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAACAACAAAGC	36192	0.12907207194484138	No Hit
CGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTG	35731	0.12742800073665803	No Hit
GCTCCCATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG	34686	0.12370120157711008	No Hit
GCTCCTATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG	28253	0.10075909727723263	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATAGCG	8990	60.825146	6
GGTCCGC	81530	59.793354	70
CGATAGC	7900	58.786022	5
CCGATAG	7320	56.670826	4
GCTCCGA	6620	55.881496	1
TATAGCG	4605	55.732533	6
CATAGCG	6145	52.107296	6
TCCGATA	8130	47.633553	3
CGGTCCG	97250	44.736332	69
ATAGCGT	105000	43.138943	7
TAGCGTA	107460	42.596638	8
AGCGTAT	108285	42.24008	9
GCGGTCC	104715	41.930225	68
GCGTATA	109170	41.904503	10
CGTATAT	110970	41.574146	11
GGCGGTC	104565	41.245564	67
GGGAGCG	103225	40.68319	56
CGCTCCA	8205	40.61625	1
AAGTTGC	114005	40.29415	20
AGTTGCT	114620	40.038418	21