FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005198396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005198396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41963619
Sequences flagged as poor quality0
Sequence length60
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2142110.510468365466763No Hit
TCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATCCATAA578200.13778601888459618No Hit
GACGGCTTACAATAAACGTGATCAAAAACTGCCTGATTTTATACCGACCGCCGGAAGGGA528600.1259662566281521No Hit
TAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTACTGCTAAGACAGCT481520.11474701455086607No Hit
CAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATGCATAC474820.11315039343961254No Hit
TGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTA433660.10334189718003112No Hit
TTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAA430390.10256265075707603No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)