FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005198400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005198400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38149582
Sequences flagged as poor quality0
Sequence length60
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2060010.5399823253633552No Hit
CAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATGCATAC684370.17939121849356043No Hit
TGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTA550100.1441955510810053No Hit
TTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAA506620.1327983095594599No Hit
ATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCG464160.12166843662926635No Hit
TAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTACTGCTAAGACAGCT418790.10977577683551028No Hit
TCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATCCATAA397140.10410074742103334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)