FastQCFastQC Report
Fri 27 May 2022
EGAF00005199478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005199478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35718823
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA835120.23380389661775808No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC783560.21936893049359438No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG528400.14793320597378026No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG489650.13708458422608158No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT395610.11075672902211811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)