FastQCFastQC Report
Tue 12 Jul 2022
EGAF00005199574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005199574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32437706
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTCTTGACATCACTGAATGCTTCTTTGACTTCCAAAGCTCTTCAGTG660330.20356864939832675No Hit
CTCTGCCACCCATTGGGTATTTGCTCTTGTCTTAGCAAAGAGCACTCAAA629400.19403344983766732No Hit
GCTGGATTTTCCTCAGAAAACTCACGTTTATGTGGGAGCTGGAAGGAGTT618400.1906423345719947No Hit
GTCCGTATGTATTCTAGCCCACAGAGTCTCACAGACTCCTTGCTCCGCAC561220.17301470085461654No Hit
CACAGATATAGATGACTGTCCGTATGTATTCTAGCCCACAGAGTCTCACA557530.17187713582458636No Hit
CTCACGTTTATGTGGGAGCTGGAAGGAGTTTCCTGTCTCAGCTTGCTGAG494740.15252003332171515No Hit
GTCTTGACATCACTGAATGCTTCTTTGACTTCCAAAGCTCTTCAGTGGGC491900.1516445090167597No Hit
GCTCTGCCACCCATTGGGTATTTGCTCTTGTCTTAGCAAAGAGCACTCAA473140.14586111607275803No Hit
CTTGACATCACTGAATGCTTCTTTGACTTCCAAAGCTCTTCAGTGGGCAT447040.13781492439693485No Hit
GGGAGCTGGAAGGAGTTTCCTGTCTCAGCTTGCTGAGCTTGAGGGATCCC387670.11951215045848188No Hit
CTCAAATCAGTCATGGAACAGCCATCAGTGCAACACAAAGTTTGTAAATC369540.11392297593424147No Hit
GCTTCTTTGACTTCCAAAGCTCTTCAGTGGGCATCTGTCCACCCCAAAGA344830.1063052979147169No Hit
CTGCCACCCATTGGGTATTTGCTCTTGTCTTAGCAAAGAGCACTCAAATC337240.1039654283814028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)