FastQCFastQC Report
Mon 13 May 2024
EGAF00005199794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005199794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89441491
Total Bases9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG2615940.2924749991030449TruSeq Adapter, Index 6 (97% over 35bp)

[OK]Adapter Content

Adapter graph