FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10616549
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGAAG14850.018.2213543
GAGACTT47050.017.915011
AACGGCC33400.017.8162619
CGTAAGT34200.017.5998551
GCATGAC32900.017.5186737
CCCGGAA22150.017.487061
CGATGCG22650.017.3925291
AACGATG24050.017.2882392
GCACGTG26800.017.2860281
ACGGCCT34300.017.28464510
CGCATGG32300.017.2724271
CCCGAAG23450.017.1745821
TAACGAC26100.017.1593881
GAGACCC31600.017.1327061
CCAGCGC20050.017.1161486
GGCTAGT24550.017.115034
CGCATGA25450.017.0716366
GAGGACG9900.016.9989477
GCGCATG24400.016.994855
TGCGGAG17300.016.9760683
Produced by FastQC (version 0.11.5)