FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8841346
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACTT39600.018.2012711
TAACGAC22650.018.0244221
CGGGAAG13750.017.9992183
CGCATGG26650.017.9204181
CCCGAAG22250.017.9033431
ACGGCCT28550.017.87632810
CCCGGAA19550.017.8430081
CGGTGTG15500.017.8118274
ACGGAAG17100.017.7610471
TCAACGG29400.017.6587967
GCGCATG19700.017.6436045
CGATGCG17950.017.5943431
CGCTGAG17150.017.5735823
AGAGAGT19450.017.5310758
GAGACCC25350.017.4069231
AACGGCC29750.017.3031569
GCACGTG22250.017.2109491
GGGAAGC12350.017.1892454
GCCGTGA11950.017.1277621
AACGATG19100.017.1040672
Produced by FastQC (version 0.11.5)