FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10206046
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCAACGG31700.018.0776737
AACGGCC32200.018.0702369
CGGGAAG15250.018.0317753
CCCGGAA20150.017.9658031
ACGGAAG21750.017.9089361
ACGGCCT32700.017.79393410
GCACGTG24600.017.7574751
GAGACCC28350.017.7373561
AACGATG22550.017.6087682
GAGACTT45200.017.5274961
ATACCCG27100.017.4528962
CCCGAAG23250.017.274111
AGGGGTG13700.017.2616374
CCAGCGC18500.017.2421076
CGGTGTG20100.017.237674
AAGGCGA11950.017.2122557
GGGGTGA11250.017.2077545
GCGCATG20750.017.1747725
CGCATGG30700.017.1681271
GCCGTGA14300.017.1591031
Produced by FastQC (version 0.11.5)