FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9434536
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGAAG12800.018.046263
GAGACTT40500.017.6855681
GGGGTGA8900.017.6732775
ACGGCCT28350.017.61454810
GCATGAC29100.017.614157
GCACGTG21350.017.5216141
GCGCATG20850.017.5147155
CCCGGAA19250.017.4897541
TAACGAC23250.017.46211
CGCATGG28600.017.4271031
AACGGCC28750.017.4077369
CGTGAGC23100.017.332474
TCAACGG28750.017.3312177
AGGGGTG12150.017.2007884
ACGGAAG19400.017.1843831
AACGATG19950.017.148742
CCCGAAG21600.017.1150651
GGGCTAG12300.017.080723
ATGGTTG35950.017.077661
GAGACCC26750.017.0282341
Produced by FastQC (version 0.11.5)