Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005200248 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9434536 |
Sequences flagged as poor quality | 0 |
Sequence length | 91 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 20005 | 0.21204010456900052 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 58290 | 0.0 | 73.67592 | 1 |
AGCAGTG | 65635 | 0.0 | 65.33345 | 2 |
CAGTGGT | 85915 | 0.0 | 49.77959 | 4 |
GCAGTGG | 89200 | 0.0 | 48.126045 | 3 |
AGTGGTA | 89695 | 0.0 | 47.712696 | 5 |
TGGTATC | 93935 | 0.0 | 45.394855 | 7 |
GTGGTAT | 94165 | 0.0 | 45.26827 | 6 |
GGTATCA | 96175 | 0.0 | 44.51941 | 8 |
GTATCAA | 97540 | 0.0 | 43.879204 | 9 |
CAACGCA | 96025 | 0.0 | 25.781103 | 12-13 |
ATCAACG | 96235 | 0.0 | 25.698488 | 10-11 |
ACGCAGA | 100420 | 0.0 | 24.708105 | 14-15 |
AGAGTAC | 99320 | 0.0 | 24.582842 | 18-19 |
GCAGAGT | 100615 | 0.0 | 24.519655 | 16-17 |
TACATGG | 98250 | 0.0 | 24.380291 | 22-23 |
AGTACAT | 99520 | 0.0 | 24.310007 | 20-21 |
ACGACGC | 390 | 0.0 | 23.966324 | 5 |
CATGGGG | 38975 | 0.0 | 22.800035 | 24-25 |
CATGGGA | 40185 | 0.0 | 22.589067 | 24-25 |
TCAACGC | 95385 | 0.0 | 22.510763 | 12-13 |