FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9277754
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGAAG14050.018.2415163
GAGACTT41800.017.9532831
CCCGGAA18650.017.9362051
ACGGAAG19000.017.8374561
AACGGCC29300.017.7942759
GAGACCC24950.017.7292881
ACGGCCT29750.017.56209210
CGCATGG28150.017.5510771
CGATGCG17550.017.4929451
TCAACGG29250.017.486257
GTGGTAG18150.017.4536175
TAACGAC23300.017.2846641
GGGCTAG11900.017.1928273
AAGGCGA11650.017.1836367
CCCGAAG20500.017.1763921
GCGCATG21050.017.1392335
TTGACCC25950.017.0884821
AACGATG21900.017.0775472
CCAGCGC18050.017.0628056
GGCTAGT20200.017.0437414
Produced by FastQC (version 0.11.5)