FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8846533
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGGAA17750.018.166251
GAGACCC24850.018.1573931
CGGTGTG16750.017.6650544
GCCGTGA12800.017.6254391
ACGGAAG16700.017.5950621
CGGGAAG12950.017.5823973
GAGACTT39000.017.5518071
AACGGCC27650.017.4642269
TGCGGAG13050.017.4476643
AACGATG21250.017.4440962
ATACCCG25150.017.4069462
TAGCGGA11000.017.29959110
CGTGAGC22450.017.2466134
AGAGAGT18200.017.2247718
GGTGTGC14200.017.1965835
GCGCATG20800.017.18695
GCACGTG21600.017.1700741
ACTATGG35600.017.1569061
CGATGCG18250.017.1258241
ACGGCCT28150.017.07597210
Produced by FastQC (version 0.11.5)