FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9792728
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCC26450.018.1405431
CGGGAAG14100.017.7094673
TCAACGG28950.017.7056437
GAGACTT42350.017.6703431
GCATGAC31400.017.5151827
CGGTGTG20150.017.3599534
CCCGGAA21250.017.3490371
CCCGAAG22400.017.3426781
AACGGCC29750.017.3405329
AAGGTGA17000.017.276715
ACGGCCT29950.017.22473510
TAACGAC22100.017.1797281
GGGCTAG14650.017.1196923
GCACGTG22850.017.0974621
CGCATGA23650.017.0700916
AAGGCGA10750.016.9853297
GCGCATG22500.016.9157925
CAGAGGC28550.016.9134718
GGCTAGT23050.016.8938584
CGCATGG29150.016.875571
Produced by FastQC (version 0.11.5)